Overview | Data requirements | Formatting dates | Descriptor list | Computing descriptors
Package: epidesc 0.1.0
Carles Milà
epidesc: Calculation of Epidemiological Descriptors
Provides tools to easily compute a series of epidemiological indicators to characterise different transmission profiles of infectious diseases with a simple pipeline: format the dates in epiyearweek format, choose the descriptors and their parameters, and compute them. The package is based on the publication 'How heterogeneous is the dengue transmission profile in Brazil? A study in six Brazilian states' by Ferreira de Almeida et al (2002) <doi:10.1371/journal.pntd.0010746>.
Authors:
epidesc_0.1.0.tar.gz
epidesc_0.1.0.zip(r-4.7-any)epidesc_0.1.0.zip(r-4.6-any)epidesc_0.1.0.zip(r-4.5-any)
epidesc_0.1.0.tgz(r-4.6-any)epidesc_0.1.0.tgz(r-4.5-any)
epidesc_0.1.0.tar.gz(r-4.7-any)epidesc_0.1.0.tar.gz(r-4.6-any)
epidesc_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
epidesc/json (API)
| # Install 'epidesc' in R: |
| install.packages('epidesc', repos = c('https://bsc-es.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bsc-es/epidesc/issues
Datasets:
- dengueRio - Dengue in Rio de Janeiro state
Last updated from:d812124dd7. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 136 | ||
| source / vignettes | OK | 197 | ||
| linux-release | OK | 146 | ||
| macos-release | OK | 201 | ||
| macos-oldrel | OK | 128 | ||
| windows-devel | OK | 73 | ||
| windows-release | OK | 88 | ||
| windows-oldrel | OK | 71 | ||
| wasm-release | OK | 92 |
Exports:desc_Apdesc_Cmaxdesc_Cmeddesc_Cnfdesc_Cwfdesc_Cwmaxdesc_Cwmeddesc_Incdesc_Isofdesc_listdesc_pdesc_Tpdesc_yearepiyearweek
Dependencies:backportscheckmatecpp11genericslubridatenseqtimechange
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Dengue in Rio de Janeiro state | dengueRio |
| Ap | desc_Ap |
| Cmax | desc_Cmax |
| Cmed | desc_Cmed |
| Cnf | desc_Cnf |
| Cwf | desc_Cwf |
| Cwmax | desc_Cwmax |
| Cwmed | desc_Cwmed |
| Inc | desc_Inc |
| Isof | desc_Isof |
| List of epidescriptors and their parameters | desc_list |
| p | desc_p |
| Tp | desc_Tp |
| Compute yearly epidescriptors | desc_year |
| Compute epiyearweek (yyyyww) indicators from dates. | epiyearweek |